基于细胞核ITS序列的变叶海棠起源新证据New evidence for hybrid origin of Malus toringoides as inferred fromn rDNA ITS sequences
唐建民;周志钦;冯婷婷;成明昊;
摘要(Abstract):
在利用ITS序列初步证明苹果属植物变叶海棠(Malus toringoides Hughes.)杂种起源的基础上,对其3个自然居群(马尔康雅尔珠林场、柯河和下阿坝)47个样品(其中18个新样品)的核糖体DNA的ITS区进行了进一步测序分析。以窄叶海棠(M.angustifolia Michx.)、草原海棠(M.ioensis Britt.)和台湾林檎(M.doumeri Chev.)作为外类群,结合已报道的变叶海棠的ITS序列,对变叶海棠及其假定亲本的种间特异位点和系统进化关系进行了分析,并用软件RDP3beta27对变叶海棠的ITS序列进行了重组检测。结果表明,变叶海棠居群有3种ITS拷贝变异类型:1)与陇东海棠(M.kansuensis Schneid.)相似的ITS拷贝;2)与花叶海棠(M.transitoria Schneid.)相似的ITS拷贝;3)杂合的ITS拷贝。在ITS基因树上3类ITS拷贝分别与2个推测亲本单独聚在一支(自展值分别为100%和92%);杂合的ITS拷贝虽与花叶海棠聚在同一大支(B),但杂合的ITS拷贝在B支内形成具有94%自展值支持的次级分支。重组检测支持杂合ITS拷贝是假定亲本ITS重组进化的产物。上述结果为变叶海棠的杂种起源提供了进一步的分子证据。
关键词(KeyWords): 变叶海棠;杂交起源;重组;ITS
基金项目(Foundation): 国家自然科学基金(NSFC30471206);; 中国农业科学院杰出人才基金
作者(Author): 唐建民;周志钦;冯婷婷;成明昊;
Email:
DOI:
参考文献(References):
- [1]CHENG Ming-hao,LI Xiao-lin,WANG Mei,ZENG Wei-guang,WU Fu-shou,JIN Qiang.A study on the variant types of MalusToringoides[J].Acta Horticultureae Sinica,1992,19(3):233-239.成明昊,李晓林,王玫,曾维光,吴福寿,金强,变叶海棠变异类型的研究[J].园艺学报,1992,19(3):233-239.
- [2]CHENG Ming-hao,ZHANG Yun-gui,LI Xiao-lin,JIN Qiang,XIE Xiao-li.Studies on the floristic geography of Malus toringoides[J].Journal of Southwest Agricultural University,1999,21(2):130-136.成明昊,张云贵,李晓林,金强,谢晓黎.变叶海棠多样性的区系地理学研究[J].西南农业大学学报,1999,21(2):130-136.
- [3]SHI Sheng-you,CHENG Ming-hao,LIANG Guo-lu.Malus toringoides(Rehd.)Hughes-Apromisingstockforappletrees[J].Journalof South-west Agricultural University:Natural Science Edition,2004,26(1):51-54.石胜友,成明昊,梁国鲁.苹果优良砧木资源—变叶海棠[J].西南农业大学学报:自然科学版,2004,26(1):51-54.
- [4]CHENG Jia-sheng,LIU Han-zhong,HAN Li-xing,DI Shu-yan.Preliminary studies on the relationship of species in the genus Malus—analysis of isoperoxidase[J].Acta Horticulturae Sinica,1986,13(1):1-8.程家胜,刘捍中,韩礼星,邸淑艳.关于苹果属果树亲缘关系的初步探索——过氧化物酶同工酶分析[J].园艺学报,1986,13(1):1-8.
- [5]LIANG Guo-lu,LI Xiao-lin.Chromosome studies of Chinese speciesof Malus Mill.[J].Acta Phytotaxonmica Sinica,1993,31(3):236-251.梁国鲁,李晓林.中国苹果属植物染色体研究[J].植物分类学报,1993,31(3):236-251.
- [6]MAO Bao-qin,LI Chun-fan,LUO Shi-ke,DING Zu-rong,LI Xi-ao-wei.Research on cross-compatibility in the genus Malus[J].Journal of Southwest Agricultural University,1996,18(4):311-315.毛宝琴,李纯凡,罗世科,丁祖蓉,李晓伟.苹果属植物杂交亲和性研究[J].西南农业大学学报,1996,18(4):311-315.
- [7]SHI Sheng-you,LIANG Guo-lu,CHENG Ming-Hao,GUO Qi-gao,LI Xiao-lin,ZHOU Zhi-qin.AFLP analysisi of the origin of Malustoringoides Hughes[J].Acta Horticultureae Sinica,2005,32(5):802-805.石胜友,梁国鲁,成明昊,郭启高,李晓林,周志钦.变叶海棠起源的AFLP分析[J].园艺学报,2005,32(5):802-805.
- [8]FENG T T,ZHOU Z Q,TANG J M,CHENG M H,ZHOU S L.ITSsequence variation supports the hybrid origin of Malus toringoidesHughes[J].Canadian Journal of Botany,2007,85:659-666.
- [9]DENG Hong-ping,CHENG Ming-hao,ZHOU Zhi-qin,LI Xiao-lin.The formation and differentiation of the diversity of Malus toringoidesHughes[J].Acta Horticultureae Sinica,2002,29(2):95-99.邓洪平,成明昊,周志钦,李晓林.变叶海棠种群多样性的形成与分化研究[J].园艺学报,2002,29(2):95-99.
- [10]BALDWIN B G.Phylogenetic utility of the internal transcribed spac-ers of nuclear ribosomal DNA in plants:An example from the com-positae[J].Molecular Phylogenetics and Evolution,1992,1(1):3-16.
- [11]BALDWIN B G,SANDERSON M J,PORTER J M,WOJCIECHOWS-KI M F,CAMPBELL C S,DONOGHU M J.The ITS region of nucle-ar ribosomal DNA:a valuable source of evidence on AngiospermPhylogeny[J].AnnalsoftheMissouriBotanicalGarden,1995,82(2):247-277.
- [12]SANG T,CRWAFORD D J,STUESSY T F.Documentation of retic-ulate evolution in peonies(Paeonia)using internal transcribedspacer sequences of nuclear ribosomal DNA:implications for Bio-geography and concerted evolution[J].Proceeding of the National A-cademy of Sciences,1995,92:6813-6817.
- [13]HAHN W J.A phylogenetic analysis of the Arecoid Line of palmsbased on plastid DNA sequence data[J].Molecular Phylogenetics andEvolution,2002,23(2):189-204.
- [14]ALVAREZ I,WENDEL J F.Ribosomal ITS sequences and plantphylogenetic inference[J].Molecular Phylogenetics and Evolution,2003,29(3):417-434.
- [15]WENDEL J F,SCHNABEL A,SEELANAN T.Bidirectional inter-locus concerted evolution following allopolyploid speciation in cotton(Gossypium)[J].Proceeding of the National Academy of Sciences,1995,92:280.
- [16]DOYLE J,DOYLE J L.Isolation of plant DNA from fresh tissue[J].Focus,1990,12:13-15.
- [17]ROBINSON J P,HARRIS S A,JUNIPER B E.Taxonomy of thegenus Malus Mill.(Rosaceae)with emphasis on the cultivated apple,Malus domestica Borkh[J].Plant Systematics and Evolution,2001,226:35-58.
- [18]THOMPSON J D,GIBSON J D,PLEWNIAK F,JEANMOUGIN F,HIGGINS D G.The CLUSTAL_X windows interface:flexible strate-gies for multiple sequence alignment aided by quality analysis tools[J].Nucleic Acids Research,1997,25:4876-4882.
- [19]TAMUR K,DUDLEY J,NEI M,KUMAR S.MEGA4:molecular evo-lutionary genetics analysis(MEGA)software version 4.0.[J]Molecu-lar Biology and Evolution,2007,24(8):1596-1599.
- [20]SWOFFORD D L.PAUP*;Phylogenetic analysisi using parsimony(*and related methods).Version 4.0b10[M].Sinaumer Associates,Sunderland,Mass,2002.
- [21]MARTIN D P,WILLIAMSON C,POSADA D.RDP2:recombinationdetection and analysis from sequence alignments[J].Bioinformatics,2005,21:260-262.
- [22]MAYNARD S J.Analyzing the mosaic structure of genes[J].Journal ofMolecular and Evolation,1992,34:126-129.
- [23]POSADA D,CRANDALL K A.Evaluation of methods for detectingrecombination from DNA sequences:computer simulations[J].Pro-ceeding of the National Academy of Sciences,2001,98:13757-13762.
- [24]SALMINEN M O,CARR J K,BURKE D S,MCCUTCHAN F E.I-dentification of breakpoints in intergenotypic recombinants of HIVtype 1 by Bootscanning[J].AIDS Research and Human Retroviruses,1995,11:1423-1425.
- [25]BONI M F,POSADA D,FELDMAN M W.An exact nonparametricmethod for inferring mosaic structure in sequence triplets[J].Genet-ics,2007,176:1035-1047.
- [26]TATIANA C T,SVETLANA S,BIRADAR D P,RAYBURN A L,KORBAN S S.Variation in nuclear DNA content in Malus speciesand cultivated apples[J].Genome,2005,48(5):924.
- [27]WENDEL J F,SCHNABEL A,SEELANAN T.An unusual ribosomalDNA sequence from Gossypium gossypioides reveals ancient,cryp-tic,intergenomic introgression[J].Molecular Phylogenetics and Evo-lution,1995,4(3):298-313.
- [28]SITES J W,DAVIS S K.Phylogenetic relationships and molecularvariability within and among six chromosome races of Sceloporusgrammicus(Saura,iguanidae)based on nuclear and mitochondrialmarkers[J].Evolution,1989,43:296-317.
- [29]CAMPBELL C S,WOJCIECHOWSKI M F,BALDWIN B G,ALICEL A,DONOGHUE M J.Persistent Nuclear DNA sequence polymor-phism in the Amelanchier Agamic complex(Rosaceae)[J].MolecularBiology and Evolition,1997,14:81-90.